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2025.04.25 Xiaoshan Zheng, Rui Li, Ting Wang, et al.,   Anal Chem   

Unraveling antibacterial mechanisms of surfactants against Staphylococcus aureus via single-cell Raman spectroscopy
AREA OF INTEREST Industrial Biotech

Abstract: Researchers have revealed the antibacterial mechanism of cationic and anionic surfactants against S. aureus using single-cell Raman spectroscopy (SCRS) in a multi-dimensional manner. The study provides new theoretical foundations and technical support for the application of surfactants in daily chemicals, medical fields, and beyond.

SPECIES

Bacteria

RACS-Seq, Chips, Kits DOI : 10.1021/acs.analchem.4c06380 PubMed : 40277167

2025.04.23 Xinxin Kang, Weixing Liu, et al.,   ACS Synth Biol   

Iron-derepressed robust production of fusarinine C siderophore by Aureobasidium melanogenum
AREA OF INTEREST Industrial Biotech

Abstract: Through metabolic reprogramming and the use of the RamanEye system (a high-throughput flow-mode Raman-activated cell sorter), researchers successfully achieved efficient and stable production of fungal siderophores by overcoming iron repression. This provides a novel technological pathway for the large-scale industrial production of siderophores. Moreover, the study demonstrates that the Raman-based “metabolic quality inspection and enhancement of seed cultures” can significantly improve the yield and efficiency of industrial fermentation.

SPECIES

Fungi

FlowRACS, Chips, Kits DOI : 10.1021/acssynbio.4c00897 PubMed : 40266998

2025.03.13 Huahui Chen, et al.,   mLife   

Engineering archaeal membrane-spanning lipid GDGT biosynthesis in bacteria: Implications for early life membrane transformations
AREA OF INTEREST Environment and Agriculture

Abstract: By reconstructing the archaeal membrane lipid biosynthesis pathway in Escherichia coli, researchers successfully synthesized archaeal membrane lipids ranging from simple to complex forms and investigated their effects on bacterial cell physiology. This study, combining experimental investigation with theoretical analysis, offers new perspectives on membrane lipid transitions in early life evolution and provides novel insights into possible pathways for the origin of eukaryotes.

SPECIES

Bacteria

EasySort, Chips, Kits DOI : 10.1002/mlf2.70001 PubMed : 40313982

2025.01.02 Xiaoyan Jing, Yanhai Gong, Zhidian Diao, Yan Ma, et al.,   Innovation   

Phylogeny-metabolism dual-directed single-cell genomics for dissecting and mining ecosystem function by FISH-scRACS-Seq
AREA OF INTEREST Environment and Agriculture

Abstract: The new technology, FISH-scRACS-seq (Fluorescence-In-Situ-Hybridization-guided Single-Cell Raman-activated Sorting and Sequencing), leverages the Raman-activated Optical Tweezers-based Cell Sorter developed by Single-Cell Biotech Inc. to combine species-targeting fluorescence in situ hybridization (FISH) with Raman spectroscopy, enabling the direct identification and isolation of functional single cells and their encoding enzymes from environmental samples. This dual-targeting approach enables researchers to match microbial species to their specific metabolic functions and uncover the underlying genomic resources that drive these processes. The method allows for the high-resolution study of ecological processes, linking species, metabolic abilities, genome sequences, metabolic pathways, and enzyme activities.

SPECIES

Bacteria

Microbiome

RACS-Seq DOI : 10.1016/j.xinn.2024.100759 PubMed :

2024.11.11 Zhidian Diao, Xiaoyan Jing, Xibao Hou, et al.,   Anal Chem   

Artificial intelligence-assisted automatic Raman-activated cell sorting (AI-RACS) system for mining specific functional microorganisms in the microbiome
AREA OF INTEREST Environment and Agriculture

Abstract: The artificial intelligence-assisted Raman-activated cell sorting (AI-RACS) system automated the isolation and functional analysis of aluminum-tolerant microorganisms (ATMs) from acidic soil, marking a shift from manual, labor-intensive procedures to high-throughput automated workflows. By employing SCRS to assess cellular metabolic activity under aluminum stress, the researchers successfully identified and isolated 13 aluminum-tolerant strains, including Burkholderia spp., Rhodanobacter spp., and Staphylococcus aureus. These strains exhibited higher metabolic activity compared to those identified through traditional cultivation methods.

SPECIES

Bacteria

Microbiome

RACS-Seq, Chips, Kits DOI : 10.1021/acs.analchem.4c03213 PubMed : 39526454

2024.09.16 Lu Sun, Min Liu, et al.,   Helicobacter   

Rapid antimicrobial susceptibility test of Helicobacter pylori to metronidazole via single-cell Raman spectrometry
AREA OF INTEREST Medicine

Abstract: Researchers employed metronidazole as a model antibiotic, and establish a method for eMIC-MA-based AST. The speed, accuracy, low cost, and mode-of-action revelation of CAST-R-HP for measuring metronidazole AST suggest it as a valuable tool for H. pylori eradication and resistance mechanism dissection.

SPECIES

Bacteria

RACS-Seq, Chips DOI : 10.1111/hel.13136 PubMed : 39282932

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